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Actalent ยท 2 days ago
Bioinformatics Engineer
Indianapolis, IN
Contract
Onsite
Entry, Mid Level
3+ years exp
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Responsibilities
Design, develop, optimize, and maintain scalable bioinformatics workflows for processing and analyzing large-scale genomics datasets in the cloud and in-house.
Incorporate a flexible modular architecture into the workflows to enable the exchange of analysis components and different algorithms.
Implement the bioinformatics data processing pipelines using workflow management tools and programming languages such as Python.
Collaborate with team members to perform quality control and validation of pipelines to ensure accuracy and reproducibility of results.
Document the development processes, including code, workflows, data flow diagrams, and standard operating procedures, following software development and DataOps best practices.
Qualification
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Required
Previous experience developing industrial scale scientific data workflows
Strong programming skills in Python including libraries for Data Science such as NumPy, pandas, NetworkX, matplotlib
Working knowledge of container technologies (such as Docker, ContainerD, or Podman) and container orchestration
Experience with data pipeline tools (like Argo, Luigi, AirFlow, or NextFlow)
Familiarity with the AWS platform (IAM, EC2, S3, CloudWatch, Spot instances) and Kubernetes, EKS, ECS, AWS Batch or other Cloud compute architectures
Specific experience analyzing large genomics datasets
Familiarity with common bioinformatics tools and datatypes for the analysis of NextGen sequencing data
Familiarity with statistical analysis methods and tools commonly used in bioinformatics analysis
Knowledge of additional programming languages such as C, Rust, Perl, R, Unix Shell
Ability to work both independently and collaboratively
Good communication skills
Interest in learning new technologies
Company
Actalent
Actalent is an engineering and sciences service company.
5,001-10,000 employees
H1B Sponsorship
Actalent has a track record of offering H1B sponsorships. Please note that this does not
guarantee sponsorship for this specific role. Below presents additional info for your
reference. (Data Powered by US Department of Labor)
Distribution of Different Job Fields Receiving Sponsorship
Trends of Total Sponsorships
2023 (31)
2022 (63)
2021 (20)
Funding
Current Stage
Late StageLeadership Team
Scott Anderson
Chief Financial Officer
Alison Deming Bucek, SPHR, SHRM-SCP
Human Resource Business Partner
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