Anatomy IT · 7 hours ago
HL7 Data Extraction Analyst
United States
Full-time
Remote
Senior Level, Lead/Staff
10+ years expAnatomy IT is a leading healthcare IT company that provides technology and cybersecurity solutions to healthcare providers. They are seeking a Senior HL7 Data Extraction Analyst responsible for extracting, transforming, and validating clinical and administrative data from EHR/EMR systems to support CMS MIPS and Value-Based Care programs.
Cloud ComputingCyber SecurityHealth CareInformation Technology
Responsibilities
Extract, transform, and validate patient clinical data from EMR/EHR systems using HL7 v2.x, CCDA, and FHIR bundles
Interpret HL7 segments (PID, PV1, ORC, OBR, OBX, DG1, RXA, etc.) for clinical measure mapping
Troubleshoot inconsistent or malformed HL7 messages and resolve data quality gaps with vendors
Build robust parsing logic to normalize data across heterogeneous EMR systems
Query EMR databases (NextGen, eCW, Greenway, Athena, etc.) to extract structured and unstructured clinical data required for MIPS measures
Understand vendor-specific table schemas, metadata dictionaries, and proprietary data models
Translate measure specifications into SQL logic based on CMS MIPS calculation rules
Validate measure completeness, timeliness, and accuracy prior to client submission
Maintain and enforce engineering implementation standards, documentation requirements, and build methodologies
Ensure all engineering work aligns with defined solution architecture, technology standards, and security baselines
Lead efforts to improve standard configurations, automation, templates, and reusable frameworks
Partner with the Manager, Methodology, to ensure engineering processes map to ITIL practices and operational workflows
Ensure engineering quality and consistency through audits, peer reviews, and structured validation
Build scalable ingestion pipelines using SQL, Spark (batch & streaming), Python, Databricks, EMR, or OCI Data Flow
Develop metadata-driven pipelines supporting multiple clients and EMR platforms
Implement data quality frameworks (DQ checks, thresholds, reconciliation reports)
Maintain robust lineage, audit trails, and governance compliance for CMS readiness
Support MIPS Advisors with extraction of numerator/denominator data for clinical quality measures
Produce audit-ready documentation and reproducible calculations for CMS submission
Map EHR data elements to CMS measure logic, identifying gaps or vendor remediation needs
Validate that clients meet annual CMS submission timelines and data completeness requirements
Work closely with: Value-Based Care Advisors & Sr. Advisors, MIPS measure analysts, Client IT/EMR administrators, Security & Compliance teams (for PHI handling controls), vCIO/vCISO for healthcare data risk and governance alignment
Translate technical data issues into actionable insights for non-technical MIPS Advisors
Coordinate with EMR vendors to resolve data extraction failures or schema changes
Qualification
Required
10+ years in data engineering, healthcare data extraction, or clinical informatics
Deep expertise with SQL, Python, Spark (batch + streaming) on Databricks, EMR, or DataFlow
Strong experience with HL7 v2.x, CCDA, FHIR, EDI X12 (837/835)
Proven ability to query and interpret ambulatory EMR/EHR schemas (NextGen, eCW, Greenway, etc.)
Hands-on optimization experience with Autonomous Data Warehouse, Snowflake, or Redshift
Experience with cloud platforms (AWS, Azure, OCI)
Skilled in building metadata-driven pipelines, implementing data lineage, auditability, and governance
Experience with Airflow or similar orchestration tools
Experience with Git, CI/CD, Terraform, DataOps workflows
Ability to work under pressure, manage multiple deadlines, and support regulatory timeframes
Preferred
Bachelor's degree in Computer Science, Information Systems, Health Informatics, or related field
Experience supporting CMS eCQMs, MIPS/MACRA, ACO performance measures, or quality reporting initiatives
Familiarity with clinical terminology (SNOMED, LOINC, RxNorm, CPT/HCPCS, ICD-10)
Experience with Delta Lake / Lakehouse architectures
Previous experience in a healthcare IT vendor, MSP, EMR company, or consulting environment
Benefits
Healthcare (medical, dental & vision)
401K fund contribution
Paid-time-off
Short & long-term disability
Company
Anatomy IT
Anatomy IT provides managed IT services to support, secure, and transform healthcare businesses.
201-500 employees
Funding
Current Stage
Growth StageTotal Funding
unknown2020-01-01Private Equity
Leadership Team
D
Daniel Lansen
Investor
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