Matterworks · 2 days ago
Senior Machine Learning Scientist
United States
Full-time
Remote
Mid, Senior Level
3+ years expMatterworks is pioneering the direct interpretation of biology from molecular omics data, leveraging their foundational Large Spectral Model technology. The Senior Machine Learning Scientist will contribute to deep learning systems by designing and optimizing neural network architectures for complex mass spectrometry data, driving projects from experimentation through deployment.
Artificial Intelligence (AI)BiotechnologyMedicalPharmaceutical
Responsibilities
Model Development : Design, adapt, and optimize deep learning architectures for our scientific domains and data modalities, working within our Large Spectral Model framework
Project Execution : Own and deliver on complex ML projects, including experiment design, implementation, evaluation, and iteration based on results
High iteration velocity : Write clean, well-tested code in PyTorch and NumPy enabling a high experimentation rate
Research and Innovation : Stay current with deep learning research and its applications in chemistry and biology. Propose and prototype new ideas to enhance our modeling capabilities
Collaboration : Work closely with scientists and engineers across the team to integrate models into our product and infrastructure
Qualification
Required
Ph.D. M.S. in a quantitative field (Computer Science, Chemistry, Physics, or related), or equivalent experience
3+ years of hands-on experience building and deploying deep learning models
Strong proficiency in Python, PyTorch, and NumPy
Demonstrated experience designing or adapting neural network architectures
Publications or a portfolio of relevant projects valued
Preferred
Experience with spectral analysis, structure prediction, or molecular representation learning is a plus
Familiarity with scientific data formats (e.g., HDF5, mzML, Zarr) is a plus
Benefits
Health & dental
Vision
Long- and short-term disability
Life insurance
401k with company match
Flexible work & unlimited time away policy
Commuter benefits and parking
Regular team meals and outings
Company support for continued education/coursework and conference participation
Company
Matterworks
Matterworks is a biotech startup that combines metabolomics with AI to simulate the metabolic environment.
51-200 employees
H1B Sponsorship
Matterworks has a track record of offering H1B sponsorships. Please note that this does not
guarantee sponsorship for this specific role. Below presents additional info for your
reference. (Data Powered by US Department of Labor)
Distribution of Different Job Fields Receiving Sponsorship
Represents job field similar to this job
Trends of Total Sponsorships
2025 (2)
2024 (1)
Funding
Current Stage
Growth StageTotal Funding
$13.75MKey Investors
Germin8 Ventures
2025-06-03Series A
2023-08-14Seed· $7.5M
2023-01-01Convertible Note
Leadership Team
Jack (J.M.) Geremia, PhD
Chief Executive Officer
Recent News
globallegalchronicle.com
2025-07-05
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2025-06-11
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