University of California, San Francisco · 19 hours ago
005933 BIOINFORMATICS PROGR 4
San Francisco, CA
Full-time
Hybrid
Senior Level
$120K/yr - $210K/yr
5+ years expThe University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research and education. They are currently seeking a Bioinformatician to analyze metagenomic and human transcriptional data, design studies, and lead research projects from analysis to manuscript writing.
AssociationBiotechnologyEducationMedicalPharmaceutical
Responsibilities
Perform analyses of single cell RNA sequencing data
Design and implement bioinformatics and statistical analyses of next-generation sequencing data representing microbiome and host transcriptome
Analyze features of the antimicrobial resistome and virulome
Carry out phylogenetic analyses
Assemble microbial genomes from metagenomic data
Apply statistical techniques designed for assessment of high dimensional genomic data including microbiome data
Implement computational and statistical approaches for performing time series analyses of metagenomic data
Perform differential gene expression analyses on RNAseq data
Utilize unsupervised methods to detect latent subgroups/clusters in high dimensional datasets
Carry out analyses of proteomics, metabolomics and mass cytometry data
Teach bioinformatics techniques to other laboratory members and students
Contribute to research study design including leading design of bioinformatics methods
Write manuscripts, contribute to grant writing, and present research findings at national meetings
Utilize large language models to enhance machine learning-based infectious disease diagnostic studies
Qualification
Required
Bachelor's degree in biological science, computational / programming, or related area and 5+ years of experience in a related field and / or equivalent combination of education and experience / training
A minimum of 4 years experience with NGS/RNAseq data analysis
In-depth knowledge of bioinformatics methods, applications programming, and data structures
In-depth knowledge of bioinformatics programming design, modification and implementation
Advanced understanding of relational databases, web interfaces and operating systems
Advanced project management skills
In-depth knowledge of modern biology and applicable field of research
Advanced interpersonal skills in order to work with both technical and non-technical personnel at all levels in the organization, including senior project leadership
Ability to communicate technical information in a clear and concise manner
Advanced ability to interface with management on a regular basis
Ability to lead a team, meet deadlines and demonstrate advanced problem-solving skills
In-depth knowledge of web, application and data security concepts and methods
Outstanding programming skills in R and Python
Experience with DESeq2, Bowtie, SAMtools, Limma, Kallisto, MOFA and Vegan
Familiarity with tools relevant to analyzing high dimension microbial and human genomic data
Strong attention to detail and solid analytical skills
Self-motivated, ability to work efficiently and independently while contributing to the team effort and meeting deadlines
Ability to utilize unsupervised methods to detect latent subgroups/clusters in high dimensional datasets
PhD level coursework in biology or medicine
Ability to communicate technical information in a clear and concise manner
Ability to analyze single cell RNA sequencing data
Ability to design scientific studies and lead development and writing of manuscripts
Preferred
PhD degree in a biological science, computer science, biostatistics or related area and / or equivalent experience / training
Company
University of California, San Francisco
University of California, San Francisco is an educational institution that focuses on medical courses.
10001+ employees
H1B Sponsorship
University of California, San Francisco has a track record of offering H1B sponsorships. Please note that this does not
guarantee sponsorship for this specific role. Below presents additional info for your
reference. (Data Powered by US Department of Labor)
Distribution of Different Job Fields Receiving Sponsorship
Represents job field similar to this job
Trends of Total Sponsorships
2025 (365)
2024 (342)
2023 (308)
2022 (306)
2021 (241)
2020 (268)
Funding
Current Stage
Late StageTotal Funding
$52.45MKey Investors
California Institute for Regenerative MedicineBaldrick's FoundationNational Institute on Aging
2025-01-30Grant· $11.9M
2023-11-21Grant
2023-10-03Grant
Leadership Team
Pamela Hudson
Chief Operating Officer | Center for Digital Health Innovation
Jimmie Ye
Professor
Recent News
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