Allen Institute · 3 days ago
Scientist I - ML/AI algorithms for Multimodal Foundational Models for Gene Regulation
Seattle, WA
Full-time
Hybrid
Mid Level
$86K/yr - $106K/yrThe Allen Institute accelerates science for a healthier world through large-scale research designed to answer complex questions in biology. They are seeking a Research Scientist to design machine learning methods for integrating multimodal data to understand Alzheimer’s disease pathology.
Life ScienceNeuroscience
Responsibilities
Develop modern machine learning algorithms to model disease progression from multimodal data (omics, neuropathology, MRI, genetic information, clinical histories)
Develop Bayesian statistical models of neurodegenerative progression
Evaluate models that can harmonize multiple cohort information
Develop causal models of disease progression
Stay at the forefront of advances in AI for multimodal disease progression modeling
Participate in a highly interactive and multidisciplinary environment
Publish/present findings in peer-reviewed journals/scientific conferences
Qualification
Required
Ph.D. in Computer Science, Applied Math, Engineering, Computational Neuroscience, Computational Biology, or related field, or equivalent combination of degree and experience
Experience working with recent Deep Learning Architectures/Foundational Models
Experience with Bayesian modeling and inference
Experience developing causal models
Preferred
Experience with current ML models such as score-based diffusion models, multimodal data fusion transformer architectures, or state-space models
Proficiency with cloud computing and with on-prem clusters
Strong publication track record
Proven ability to work independently and manage multiple projects simultaneously while meeting deadlines in a highly collaborative environment
Excellent written and verbal communication skills, with the ability to collaborate effectively in a multidisciplinary team environment
Benefits
Medical
Dental
Vision
Basic life insurance
401k plan
Paid time off is also available as outlined in the Allen Institutes Benefits Guide
Relocation assistance
Company
Allen Institute
The Allen Institute is dedicated to answering some of the biggest questions in bioscience and accelerating research worldwide.
Founded in 2003
501-1000 employees
H1B Sponsorship
Allen Institute has a track record of offering H1B sponsorships. Please note that this does not
guarantee sponsorship for this specific role. Below presents additional info for your
reference. (Data Powered by US Department of Labor)
Distribution of Different Job Fields Receiving Sponsorship
91%
Represents job field similar to this job
Engineering and Development
Customer Service and Support
Management and Executive
Trends of Total Sponsorships
*2026 (12)
2025 (41)
2024 (32)
2023 (24)
2022 (26)
2021 (17)
2020 (7)
Funding
Current Stage
Late StageTotal Funding
$1M2026-06-02Grant· $1M
Leadership Team
Rui Costa
President and CEO
Andy Hickl
Chief Technology Officer
Recent News
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2026-06-04
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2026-06-03
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