166 applicants

Company

Natera · 1 day ago

Sr Software Engineer, Bioinformatics Pipelines

San Carlos, CA

Full-time

Remote

Mid, Senior Level

$118K/yr - $148K/yr

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BiotechnologyGenetics

H1B Sponsor Likely

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Responsibilities

Implement new and enhance existing functionality in our portfolio of pipelines supporting Natera’s business

Lead the end to end delivery of functionality, from requirements to deployment

Process large numerical datasets efficiently

Support and extend our next generation sequencing framework

Troubleshoot and resolve defects, craft reliable unit tests, perform code reviews and root cause analysis

Continue improving processes and procedures and evangelizing best practices

Understand and be compliant with regulatory, security and data privacy requirements

Qualification

Find out how your skills align with this job's requirements. If anything seems off, you can easily click on the tags to select or unselect skills to reflect your actual expertise.

BioinformaticsContainerization DockerOrchestration DNAnexusProgramming Language JavaCloud AWSData Structures / AlgorithmsContainerization SingularityOrchestration KubernetesOrchestration Language WDLProgramming Language PythonSource control GitLabBioinformatics Tools GATKSecurity / Privacy HIPAABiology Next-generation sequencingData Science Machine learningTechnical documentation skills

Required

BS Computer Science, Bioinformatics, Information Systems, etc. MS preferred.

Data Structures / Algorithms Coursework

Containerization: Docker (preferred), Singularity

Orchestration: DNAnexus (preferred), SevenBridges, Azure / AWS Batch, Cromwell, Kubernetes, Toil, miniWDL, AWS Omics

Orchestration Language: WDL (preferred), CWL, YAML, Nextflow, Snakemake

Cloud: AWS, Azure, Google, AliBaba

Programming Language: Java (preferred), Python, R

Source control: GitLab (preferred), Bitbucket, GitHub, TFS

Extensive analytic troubleshooting skills

Excellent communication and organizational skills, especially for problem solving under pressure

Strong technical documentation skills

Eagerness to acquire new skills in genetics

Ability to thrive in a fast-paced environment and manage multiple tasks independently

Preferred

High performance computing on a local cluster

Bioinformatics Tools: GATK, SAMtools, bedtools, bwa, primer3, etc.

Security / Privacy: HIPAA, GDPR

Biology: Next-generation sequencing, Sanger sequencing, MLPA, PCR, Southern Blot

Data science: Machine learning, deep neural networks

Benefits

Comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents

Free testing in addition to fertility care benefits

Pregnancy and baby bonding leave

401k benefits

Commuter benefits

Generous employee referral program

Company

Natera

Glassdoor

3.5

Natera specializes in cell-free DNA testing to provide a more targeted interventions to oncology, women's health, and organ health.

Founded in 2004

San Carlos, California, USA

1001-5000 employees

https://www.natera.com/

H1B Sponsorship

Natera has a track record of offering H1B sponsorships. Please note that this does not guarantee sponsorship for this specific role. Below presents additional info for your reference. (Data Powered by US Department of Labor)

Distribution of Different Job Fields Receiving Sponsorship

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Trends of Total Sponsorships

2023 (24)

2022 (54)

2021 (75)

2020 (47)